libpappsomspp
Library for mass spectrometry
grppeptideset.h
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1
2/*******************************************************************************
3 * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4 *
5 * This file is part of the PAPPSOms++ library.
6 *
7 * PAPPSOms++ is free software: you can redistribute it and/or modify
8 * it under the terms of the GNU General Public License as published by
9 * the Free Software Foundation, either version 3 of the License, or
10 * (at your option) any later version.
11 *
12 * PAPPSOms++ is distributed in the hope that it will be useful,
13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15 * GNU General Public License for more details.
16 *
17 * You should have received a copy of the GNU General Public License
18 * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19 *
20 * Contributors:
21 * Olivier Langella <olivier.langella@u-psud.fr> - initial API and
22 *implementation
23 ******************************************************************************/
24#pragma once
25
26#include <list>
27
28#include "grpprotein.h"
29
30namespace pappso
31{
32
33class GrpMapPeptideToSubGroupSet;
34
36{
39
40 private:
41 std::list<GrpPeptide *> m_peptidePtrList;
42
43 bool privContainsAll(const GrpPeptideSet &peptideSetIn) const;
44
45 public:
47 GrpPeptideSet(const GrpPeptideSet &other);
48 GrpPeptideSet(const GrpProtein *p_protein);
51 bool operator==(const GrpPeptideSet &other) const;
52
53 unsigned int
54 size() const
55 {
56 return m_peptidePtrList.size();
57 };
58 bool biggerAndContainsAll(const GrpPeptideSet &peptideSet) const;
59 bool contains(const GrpPeptide *p_grp_peptide) const;
60 bool containsAll(const GrpPeptideSet &peptideSet) const;
61 bool containsAny(const GrpPeptideSet &peptideSet) const;
62 void addAll(const GrpPeptideSet &peptideSet);
63 const QString printInfos() const;
64
65 void numbering();
66 void setGroupNumber(unsigned int i);
67
68 std::vector<const GrpPeptide *> getGrpPeptideList() const;
69};
70} // namespace pappso
std::list< GrpPeptide * > m_peptidePtrList
Definition: grppeptideset.h:41
unsigned int size() const
Definition: grppeptideset.h:54
const QString printInfos() const
void addAll(const GrpPeptideSet &peptideSet)
std::vector< const GrpPeptide * > getGrpPeptideList() const
bool operator==(const GrpPeptideSet &other) const
bool containsAny(const GrpPeptideSet &peptideSet) const
void setGroupNumber(unsigned int i)
GrpPeptideSet & operator=(const GrpPeptideSet &other)
bool biggerAndContainsAll(const GrpPeptideSet &peptideSet) const
bool contains(const GrpPeptide *p_grp_peptide) const
bool privContainsAll(const GrpPeptideSet &peptideSetIn) const
bool containsAll(const GrpPeptideSet &peptideSet) const
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39